Package: blisa 0.2.0

blisa: Infer Cell-Cell Communication from Spatial Transcriptomics

Identifies cell-cell communication hotspots in spatial transcriptomics data using bivariate Local Moran's I statistics on hexagonally binned cells. Provides functions for spatial weighting, ligand-receptor pair filtering, hotspot detection, and visualisation of sender-receiver cell-type interactions.

Authors:Yunshun Chen [aut, cre], Lei Qin [aut], Lizhong Chen [aut]

blisa_0.2.0.tar.gz
blisa_0.2.0.zip(r-4.7)blisa_0.2.0.zip(r-4.6)blisa_0.2.0.zip(r-4.5)
blisa_0.2.0.tgz(r-4.6-any)blisa_0.2.0.tgz(r-4.5-any)
blisa_0.2.0.tar.gz(r-4.7-any)blisa_0.2.0.tar.gz(r-4.6-any)
blisa_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
blisa/json (API)

# Install 'blisa' in R:
install.packages('blisa', repos = c('https://yunshun.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.70 score 12 exports 97 dependencies

Last updated from:e20d350a6a. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK192
source / vignettesOK266
linux-release-x86_64OK187
macos-release-arm64OK192
macos-oldrel-arm64OK154
windows-develOK121
windows-releaseOK109
windows-oldrelOK165
wasm-releaseOK154

Exports:blisacomputeSpatialWeightsfilterLRpairshexBinCellsis.blisaplotCCIplotCCILRplotCCIspatialplotCCIsummaryplotHotspotsplotLRrankrunCCI

Dependencies:abindaskpassBiobaseBiocFileCacheBiocGenericsbitbit64blobbootcachemcirclizeclassclassIntcliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurlDBIdbplyrDelayedArraydeldirdigestdoParalleldplyre1071farverfastmapfilelockforeachgenericsGenomicRangesGetoptLongggplot2GlobalOptionsgluegtablehttr2IRangesisobanditeratorsKernSmoothlabelinglatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoiseopensslpillarpkgconfigpngproxypurrrR6rappdirsRColorBrewerRcpprjsonrlangRSQLites2S4ArraysS4VectorsS7scalesSeqinfosfshapeSingleCellExperimentspSparseArraySpatialExperimentspDataspdepstringistringrSummarizedExperimentsystibbletidyrtidyselectunitsutf8vctrsviridisLitewithrwkXVector

BLISA Workflow

Rendered fromgetting-started.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2026-06-02
Started: 2026-06-02