Introduction | Load Package | Load Example Data | Visualize Spatial Cell Types | Filter Ligand–Receptor Pairs | Run BLISA | Summarize Ligand–Receptor Interaction Enrichment | Visualize Spatial Distribution of Top LR Pairs | Run Cell–Cell Interaction Analysis | Visualize CCI Heatmap | Visualize One Ligand–Receptor Pair | Session Information

Introduction | Load Package | Load Example Data | Visualize Spatial Cell Types | Filter Ligand–Receptor Pairs | Run BLISA | Summarize Ligand–Receptor Interaction Enrichment | Visualize Spatial Distribution of Top LR Pairs | Run Cell–Cell Interaction Analysis | Visualize CCI Heatmap | Visualize One Ligand–Receptor Pair | Session Information

What is it? | How to get help | Further reading

Installation | Quick start | Load data | Grid-based analysis | Density calculation | Find Regions-of-interest (ROIs) | Detected by algorithm | Select ROI by user | Testing relationship between cell types | Cell-based analysis | cell annotation based on grid density